Hi Seth,

Thanks for your reply! i am using CentOS 4.4 and R 2.5.0.

the follow are my log:


R

R version 2.5.0 (2007-04-23)
Copyright (C) 2007 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> sessionInfo()
R version 2.5.0 (2007-04-23)
i686-pc-linux-gnu

locale:
LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C

attached base packages:
[1] "stats"     "graphics"  "grDevices" "utils"     "datasets"  "methods"
[7] "base"
> capabilities()
    jpeg      png    tcltk      X11 http/ftp  sockets   libxml     fifo
   FALSE    FALSE    FALSE    FALSE     TRUE     TRUE     TRUE     TRUE
  cledit    iconv      NLS  profmem
    TRUE     TRUE     TRUE    FALSE

and i reinstall bioconductor again

The downloaded packages are in
        /tmp/RtmpZZpa44/downloaded_packages
Warning messages:
1: installation of package 'widgetTools' had non-zero exit status in:
install.packages(pkgs = pkgs, repos = repos, dependencies = dependencies,
2: installation of package 'tkWidgets' had non-zero exit status in:
install.packages(pkgs = pkgs, repos = repos, dependencies = dependencies,
3: installation of package 'marray' had non-zero exit status in:
install.packages(pkgs = pkgs, repos = repos, dependencies = dependencies,
>

but i have tcl/tk installed

rpm -q tcl tcl-devel tk tk-devel
tcl-8.4.7-2
tcl-devel-8.4.7-2
tk-8.4.7-2
tk-devel-8.4.7-2

Do i need reinstall R?

Best!
On 5/10/07, Seth Falcon <sfalcon@fhcrc.org> wrote:
>
> Hello,
>
> "Daofeng.Li" <lidaof@gmail.com> writes:
> > sorry for disturb again,i paste some supplement information
>
> A bit more supplemental information would still be useful.  In
> particular, the output of sessionInfo() sot that we know what OS and
> type of hardware you are running on.  However, from the output you
> pasted, I will guess it is Linux.
>
> When you start R, what does capabilities() say?  The installation log
> for WidgetTools is fairly clear in telling you that there is a problem
> with using R's tcltk package.  So you will want to investigate that
> first.  You might also consult the R FAQs.
>
> + seth
>
> --
> Seth Falcon | Computational Biology | Fred Hutchinson Cancer Research
> Center
> http://bioconductor.org
>



-- 
Daofeng.Li

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