hi olga,

you can try the RMAPPER package, i've never used it, but basically it should
be an interface to the mapper.chip.org database that lists TFBS in the
promoters/introns/exons of genes.

jo



On 4/27/07, Ольга Камнева <kamushkina@gmail.com> wrote:
>
> Hello, all!
>
> I questioned yesterday, but I made principal missing.
> I'd like to know, are there any BioC packages which allow to automatically
> get the information about transcription factor binding sites in regulation
> region of genes?
> For example, package BiomaRt allows annotate genes with information from
> GO,
> KEGG,  OMIM and so on.
> Are there packages integrated with databases like TRANSFAC or TRRD.
>
> Looking forward for answers =)
> Olga
>
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Tyrolean Cancer Research Institute
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Email: johannes.rainer@tcri.at
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