Hi, Jim and Seth,
Thank you so much for your quick reply and help!!
Ren


James W. MacDonald wrote:
I have just pushed a fix for this to the release repository, so it looks
like GOstats will ship with a fixed version of probeSetSummary().
Note that this function still doesn't work exactly as I would like - the
vector of 'selected' identifiers only counts one probeset per Entrez
Gene ID because of the necessity to subset to unique Entrez Gene IDs
before doing the hyperGTest(). The devel version now has an additional
argument 'sigProbesets' that can be used to overcome this limitation,
but we are well past the point that changes to the API can be introduced
to release packages so this will have to wait for release 2.1 (and those
who like to live on the bleeding edge with devel packages).

Best,

Jim

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