James,
When I use R version 2.4.0 (2006-10-03) I am able to
use plotHist() and plotDeg(() on my Affy chips and get a legend telling me 
which chips correspond to each curves.  However, when
I use R version 2.5.0 Under development I have produced the
"Error: could not find function "plotHist" or "plotDeg".  When I used plotAffyRNAdeg()
all the lines are the same color and there is no legend to distinguish
the curves.  There is no "plotHist" in version 2.5dev and "plotDensity" is not
looking the same as "plotHist".
I am wondering what your intentions are for these functions in R version 2.5dev?

Lana Schaffer
Biostatistics/Informatics
The Scripps Research Institute
DNA Array Core Facility
La Jolla, CA 92037
(858) 784-2263
(858) 784-2994
schaffer@scripps.edu



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