Hi, 
   
  I have some problem relating to DNA sequence analysis and wonder if anyone can shed a light. 
   
  I have 18 aligned sequences, having 6 consensus motifs in each sequence. The position of these 6 motifs are the same in all the sequences (all of the sequences are in the same length). Is there any package I could use to do bootstrapping/permutation on the sequences in order to calim that that these are not random motifs? 
   
  Many thanks.
   
  Regards,
  Siew Chinn

 
---------------------------------
We won't tell. Get more on shows you hate to love

	[[alternative HTML version deleted]]

