Hi,

I tried to use function ontoCompare() in package goTool.
myontoCompare<-ontoCompare(mylist,probeType="hgu133a",goType="BP",endnode=myendnode,method="TGenes",plot=TRUE)
I got bar chart. I am wondering whether the height of the bar is the number of probes which belong to the corresponding GO term(end node) devided by the total number of probe ids in one of the two lists. But from the document "goTools.pdf", it says "TGenes: for each end node, return the number of direct children found/ total number of probe ids". I am not very clear about this part. Could someone help me here?

Thanks!

Ren 

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