Hello.  I recently re-ran gcrma on my dataset with version 2.6.  Why are the results so different from those I got with version 1.1?  I know there were large changes between 1.0 and 1.1, but I can't find documentation explaining the changes I am seeing with the recent gcrma.  I am using simple gcrma with default arguments.  Could someone direct me to a document that clearly lists the methodological changes that were introduced to the gcrma algorithm for all relevant versions?  Thank you.


Karen Vranizan
Functional Genomics Lab
261A Life Sciences Addition
Mail Code #3200
UC Berkeley, CA 94720-3200
 
Phone: 510-642-7520
Fax:      510-643-2685
email: vranizan@berkeley.edu

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