Hi Wolfgang,
Upgrading seemed to do the trick....I just installed R2.4.1 and then
Bioconductor and cellHTS and it worked straight off !

thanks for the help
Russell


On 14/02/07, Wolfgang Huber <huber@ebi.ac.uk> wrote:
>
> Dear Russell,
>
> the package cellHTS only uses R code, so we need to figure out which
> package that R depends on (or what in R itself) causes the blue screen
> of death, and to fix or at least avoid it.
>
> To narrow down the problem:
>
> 1. Can you try switching off the image map generation by supplying
> "map=FALSE" to the "imageScreen" function. This function is called from
> "writeReport" and arguments for it can be supplied via the latter's
> "imageScreenArgs" argument.
>
> 2. Similarly, try to switch off the tcl/tk progress bar by setting
> "progressReport=FALSE".
>
> 3. Also try "plotPlateArgs=FALSE"
>
> 4. Upgrade to R 2.4.1.
> http://www.stats.bris.ac.uk/R
>
> 5. If it still fails, can you send us the produced output (as far as the
> function got until it crashed), this might help narrow down where/when
> it happens.
>
> 6. ultimately, I could have a look at your data in private and see
> whether I can reproduce and locate the problem.
>
> Best wishes
> Wolfgang
>
>
> PS I moved this to the bioconductor list since it is probably more
> appropriate.
>
> ------------------------------------------------------------------
> Wolfgang Huber  EBI/EMBL  Cambridge UK  http://www.ebi.ac.uk/huber
>
>
> > Hi all,
> > I've been using cellHTS on a resonably large dataset.  Everything seems
> to
> > work fine until I try and write the report.
> > My laptop seems to be having trouble completing the html output and
> causes a
> > physical memory dump (aka Blue screen of death).
> > It seems to be hanging when writing the html for all the mouse
> > overs on the Screen-wide heatmap image.
> >
> > I'm using R 2.4, and cellHTS 1.4
> >
> > any ideas on what's causing this and how I might go about solving the
> > problem ?
> >
> > cheers
> > Russell
> >
>



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Russell Grocock

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