Hi,
I'm having some problems when trying to use biomaRt with a local install 
database;
I've downloaded and installed locally the ensembl biomart database 
version ensembl_mart_42,
(ftp://ftp.ensembl.org/pub/release-42/mart_42/data/mysql/ensembl_mart_42)
I created all the tables and populated them...
I get the following error when trying to connect to it with useMart:
 > library(biomaRt)
Carico il pacchetto richiesto: XML
Carico il pacchetto richiesto: RCurl
 > ensembl=useMart("ensembl_mart_42", dataset="hsapiens_gene_ensembl", 
host="pendragon.bio.uniroma2.it", user="brusel", password="*******", 
local = TRUE, mysql = TRUE)
Carico il pacchetto richiesto: RMySQL
Carico il pacchetto richiesto: DBI
Errore in `dimnames<-.data.frame`(`*tmp*`, value = list(character(0), 
c("name",  :
        'dimnames' fornita per i ldata frame non valida

I'm using R 2.4.0 and biomaRt 1.8.1
Any help will be very very appreciated
Thanks.
-- 

_________________________________________

Alessandro Bruselles

University of Rome "Tor Vergata"
Address: Via della Ricerca Scientifica - 00133 Rome - Italy
e-mail: a.bruselles@gmail.com <mailto:a.bruselles@gmail.com>


	[[alternative HTML version deleted]]

