Hi James,

I have moved the GUI part of the cosmo package out into a separate package
called cosmoGUI. The remainder does not depend on tcl/tk. As I was working
on this, I realized that I should probably also move the functions for
plotting sequence logos into a separate package. These are now in a package
called seqLogo. The cosmo package depends on seqLogo, but not on cosmoGUI.

I have just submitted these new packages to Bioconductor and am waiting to
hear back from them. Until then I won't commit the changes to the
repository. In the meantime, you can download the latest versions of all
three packages from

http://cosmoweb.berkeley.edu/software.html

Let me know if this works for you.

Best,
Oliver



On 1/4/07, Diggans, James C. <jdiggans@mitre.org> wrote:
>
>
> Given the recent post here:
>
> https://stat.ethz.ch/pipermail/bioconductor/2006-November/014979.html
>
> I'm attempting to install the cosmo package on a headless server that
> has no support for Tk compiled into its R installation. I'm hoping Dr.
> Bembom or someone else in the know might be able to suggest a way to
> install a subset of cosmo functionality. Alternatively, are there any
> plans to extract the visualization component from the analysis
> component of the package?
>
> My thanks,
> -j
>
> ----------------------------------------
> James Diggans
> Emerging Technologies Office
> The MITRE Corporation
> 7515 Colshire Dr. H205
> McLean, VA 22102
> 703-983-2831 (voice)
> 703-983-6501 (fax)
>
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