

Hello all,

I have a chip with 1000 probesets, there is 4 type of probesets.

We have 100 samples ( 50 samples of biological condition A and 100 samples
of biological condition B), i want to use a ANOVA model to test for the
significance of differents effects :

        biological condition

         probe type

        biological condition * probe type

I want to perform an "alt splice ANOVA" as in partek software.

Any help would be greatly appreciated (code or something else).

Thanks in advance.

M.P

Malick Paye | bioMérieux | Biomathematician
Phone: (+33)4 78 87 70 97 | Fax: (+33)4 78 87 53 40
[Parc Polytec, 5 Rue des Berges, 38004 Cedex 01  Grenoble, France]


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