Hi,

 

When I try to load package "affycoretools", I get follow error messages:

 

> local({pkg <- select.list(sort(.packages(all.available = TRUE)))

+ if(nchar(pkg)) library(pkg, character.only=TRUE)})

Loading required package: limma

Loading required package: GOstats

Loading required package: graph

Loading required package: GO

Loading required package: annotate

Loading required package: RBGL

Loading required package: Category

Loading required package: KEGG

Loading required package: genefilter

Loading required package: survival

Loading required package: splines

Loading required package: biomaRt

Loading required package: XML

 

Attaching package: 'XML'

 

 

        The following object(s) are masked from package:graph :

 

         addNode 

 

Loading required package: RCurl

 

Attaching package: 'biomaRt'

 

 

        The following object(s) are masked from package:annotate :

 

         getGO 

 

Error in loadNamespace(i, c(lib.loc, .libPaths())) : 

        in 'annaffy' methods specified for export, but none defined: [,
[[, colnames, colnames<-, getCSS, getHTML, getTD, getText, getURL,
probeids, probeids<-, saveHTML, saveText, show

Error: package/namespace load failed for 'affycoretools'

 

 

My session Info:

 

> sessionInfo()

R version 2.4.0 (2006-10-03) 

i386-pc-mingw32 

 

locale:

LC_COLLATE=English_United States.1252;LC_CTYPE=English_United
States.1252;LC_MONETARY=English_United
States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252

 

attached base packages:

[1] "splines"   "tools"     "methods"   "stats"     "graphics"
"grDevices"

[7] "utils"     "datasets"  "base"     

 

other attached packages:

   biomaRt      RCurl        XML    GOstats   Category genefilter
survival 

   "1.8.1"    "0.8-0"    "1.3-2"    "2.0.4"    "2.0.3"   "1.12.0"
"2.30" 

      KEGG       RBGL   annotate         GO      graph      limma
affy 

  "1.12.0"   "1.10.0"   "1.12.0"   "1.14.1"   "1.12.0"    "2.9.1"
"1.12.1" 

    affyio    Biobase 

   "1.2.0"   "1.12.2"

 

Thanks in advance, 

Weiyin Zhou

Statistics and Data Analyst

ExonHit Therapeutics, Inc.

217 Perry Parkway, Building # 5

Gaithersburg, MD 20877

 

email: Weiyin.zhou@exonhit-usa.com <mailto:Weiyin.zhou@exonhit-usa.com> 

phone: 240.404.0184

fax: 240.683.7060

 

 

 


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