Dear all,
 
I have made a microarray experiment with some EST´s (expression sequence tags) and I would like to see if those EST´s are in a  known region of structural variation in the human genome. 
 
So I was wondering if anyone knows if there is any R/BioC package or other software where I can input all my EST´s ( their sequence in FASTA format or their positions in the genome) and then retrieve an output file with those that are mapped to a known region of structural variation.
 


Best regards

João Fadista
Ph.d. student


 	
 	 Danish Institute of Agricultural Sciences	
Research Centre Foulum	
Dept. of Genetics and Biotechnology	
Blichers Allé 20, P.O. BOX 50	
DK-8830 Tjele	
 	
Phone:	 +45 8999 1900	
Direct:	 +45 8999 8999	
E-mail:	 Joao.Fadista@agrsci.dk <mailto:Joao.Fadista@agrsci.dk> 	
Web:	 www.agrsci.org <http://www.agrsci.org/> 	
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