The following two commands give me the same result for corfit$consensus:
    
corfit<-duplicateCorrelation(MA,c(1,1,1,1,1,1),ndups=1,block=(1,1,2,2,3,3))
    
corfit<-duplicateCorrelation(MA,c(1,-1,1,-1,1,-1),ndups=1,block=(1,1,2,2,3,3))
    
It seems that the design vector argument doesn't affect the calculations.  Is that correct?  If not, then why is the design vector used here?

Thank you.

Karen Vranizan
Functional Genomics Lab
261A Life Sciences Addition
Mail Code #3200
UC Berkeley, CA 94720-3200
 
Phone: 510-642-7520
Fax:      510-643-2685
email: vranizan@berkeley.edu

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