Thanks, the problem is solved! But now, I had the following error:

* Installing *source* package 'RBGL' ...
untarring boost include tree...
** libs
g++ -I/usr/share/R/include -I/usr/share/R/include    -IboostIncl  -fpic  -g
-O2 -c bbc.cpp -o bbc.o
g++ -I/usr/share/R/include -I/usr/share/R/include    -IboostIncl  -fpic  -g
-O2 -c cliques.cpp -o cliques.o
g++ -I/usr/share/R/include -I/usr/share/R/include    -IboostIncl  -fpic  -g
-O2 -c hcs.cpp -o hcs.o
g++ -I/usr/share/R/include -I/usr/share/R/include    -IboostIncl  -fpic  -g
-O2 -c incrConnComp.cpp -o incrConnComp.o
g++ -I/usr/share/R/include -I/usr/share/R/include    -IboostIncl  -fpic  -g
-O2 -c interfaces.cpp -o interfaces.o
boostIncl/boost/graph/depth_first_search.hpp: In function 'void
boost::depth_first_search(const VertexListGraph&, const
boost::bgl_named_params<P, T, R>&) [with VertexListGraph =
std::vector<std::vector<unsigned int, std::allocator<unsigned int> >,
std::allocator<std::vector<unsigned int, std::allocator<unsigned int> > > >,
P = boost::topo_sort_visitor<std::back_insert_iterator<std::vector<unsigned
int, std::allocator<unsigned int> > > >, T = boost::graph_visitor_t, R =
boost::bgl_named_params<boost::identity_property_map, boost::vertex_index_t,
boost::no_property>]':
boostIncl/boost/graph/topological_sort.hpp:64:   instantiated from 'void
boost::topological_sort(VertexListGraph&, OutputIterator, const
boost::bgl_named_params<P, T, R>&) [with VertexListGraph =
std::vector<std::vector<unsigned int, std::allocator<unsigned int> >,
std::allocator<std::vector<unsigned int, std::allocator<unsigned int> > > >,
OutputIterator = std::back_insert_iterator<std::vector<unsigned int,
std::allocator<unsigned int> > >, P = boost::identity_property_map, T =
boost::vertex_index_t, R = boost::no_property]'
boostIncl/boost/graph/transitive_closure.hpp:120:   instantiated from 'void
boost::transitive_closure(const Graph&, GraphTC&, G_to_TC_VertexMap,
VertexIndexMap) [with Graph = R_adjacency_list<boost::directedS, double>,
GraphTC = R_adjacency_list<boost::directedS, double>, G_to_TC_VertexMap =
boost::iterator_property_map<BGL_sequential_vertex_coloring::Vertex_Size_Type*,
boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t,
boost::default_color_type, boost::no_property>, unsigned int>, unsigned int,
unsigned int&>, VertexIndexMap =
boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t,
boost::default_color_type, boost::no_property>, unsigned int>]'
boostIncl/boost/graph/transitive_closure.hpp:263:   instantiated from 'void
boost::transitive_closure(const Graph&, GraphTC&) [with Graph = Graph_dd,
GraphTC = Graph_dd]'
interfaces.cpp:371:   instantiated from here
boostIncl/boost/graph/depth_first_search.hpp:324: error: no matching
function for call to 'vertices(const std::vector<std::vector<unsigned int,
std::allocator<unsigned int> >, std::allocator<std::vector<unsigned int,
std::allocator<unsigned int> > > >&)'
make: *** [interfaces.o] Error 1
chmod: impossibile accedere a `/usr/local/lib/R/site-library/RBGL/libs/*':
Nessun file o directory
ERROR: compilation failed for package 'RBGL'
** Removing '/usr/local/lib/R/site-library/RBGL'

I read in the mailing list about this error, but I didn't find the
solution...

Thank-you

Davide


2006/11/29, lgautier@altern.org <lgautier@altern.org>:
>
> > Hello everyone,
> >
> > I tryed to install RBGL package on my linux ubuntu (v. 6.10 - Edgy ). I
> > found the following error:
> >
> > * Installing *source* package 'RBGL' ...
> > untarring boost include tree...
> > ** libs
> > g++ -I/usr/share/R/include -I/usr/share/R/include    -IboostIncl  -fpic
> > -g
> > -O2 -c bbc.cpp -o bbc.o
> > make: g++: Command not found
> > make: *** [bbc.o] Error 127
> > chmod: impossibile accedere a
> `/usr/local/lib/R/site-library/RBGL/libs/*':
> > Nessun file o directory
> > ERROR: compilation failed for package 'RBGL'
> > ** Removing '/usr/local/lib/R/site-library/RBGL'
> >
> > I installed g++ 4.1, lib g++ 2.8.1.3-dev, libboost-dev 1.33.1.
> > Someone could help me?
>
> Ubuntu (as well as a number of other distributions) allow one to
> have different versions of programs/libraries installed.
>
> Having the debian package g++-4.1 installed means that you have
> an executable 'g++-4.1' in your path.
> Having the debian package g++ installed will means you have the
> default version installed (and 'g++' in your path). This is probably
> want you want.
>
>
> HTH,
>
>
> L.
>
> >
> > Thank-you very much
> >
> > Davide
> >
> >       [[alternative HTML version deleted]]
> >
> > _______________________________________________
> > Bioconductor mailing list
> > Bioconductor@stat.math.ethz.ch
> > https://stat.ethz.ch/mailman/listinfo/bioconductor
> > Search the archives:
> > http://news.gmane.org/gmane.science.biology.informatics.conductor
> >
>
>
>

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