Dear All,

I followed the instructions from
http://www.bioconductor.org/docs/install-howto.html


package 'affyio' successfully unpacked and MD5 sums checked
package 'GO' successfully unpacked and MD5 sums checked
package 'KEGG' successfully unpacked and MD5 sums checked
package 'RColorBrewer' successfully unpacked and MD5 sums checked
package 'affy' successfully unpacked and MD5 sums checked
package 'affydata' successfully unpacked and MD5 sums checked
package 'affyPLM' successfully unpacked and MD5 sums checked
package 'annaffy' successfully unpacked and MD5 sums checked
package 'annotate' successfully unpacked and MD5 sums checked
package 'Biobase' successfully unpacked and MD5 sums checked
package 'Biostrings' successfully unpacked and MD5 sums checked
package 'DynDoc' successfully unpacked and MD5 sums checked
package 'gcrma' successfully unpacked and MD5 sums checked
package 'genefilter' successfully unpacked and MD5 sums checked
package 'geneplotter' successfully unpacked and MD5 sums checked
package 'hgu95av2' successfully unpacked and MD5 sums checked
package 'limma' successfully unpacked and MD5 sums checked
package 'marray' successfully unpacked and MD5 sums checked
package 'matchprobes' successfully unpacked and MD5 sums checked
package 'multtest' successfully unpacked and MD5 sums checked
package 'ROC' successfully unpacked and MD5 sums checked
package 'vsn' successfully unpacked and MD5 sums checked
package 'xtable' successfully unpacked and MD5 sums checked
The downloaded packages are in
        C:\Documents and Settings\jjoshua\Local
Settings\Temp\Rtmpie3Yqb\downloaded_packages
updating HTML package descriptions
> utils:::menuInstallLocal()

*Load the packages from the zip file *(i downloaded the packages from
http://www.bioconductor.org/packages/release/Software.html)
**
package 'ctc' successfully unpacked and MD5 sums checked
package 'graph' successfully unpacked and MD5 sums checked
package 'RBGL' successfully unpacked and MD5 sums checked
package 'Rgraphviz' successfully unpacked and MD5 sums checked
package 'Ruuid' successfully unpacked and MD5 sums checked
updating HTML package descriptions

*Call the library *

> library(RBGL)
Loading required package: graph
Loading required package: Ruuid
Error in dyn.load(x, as.logical(local), as.logical(now)) :
        unable to load shared library
'C:/PROGRA~1/R/R-24~1.0/library/Ruuid/libs/Ruuid.dll':
  LoadLibrary failure:  The specified procedure could not be found.
Error: package 'Ruuid' could not be loaded

*Try to copy and paste maxClique from the help packages()*
*Again the same Error message*
> help.start()
updating HTML package listing
updating HTML search index
If nothing happens, you should open
'C:\PROGRA~1\R\R-24~1.0\doc\html\index.html' yourself
> help.start()
updating HTML package listing
updating HTML search index
If nothing happens, you should open
'C:\PROGRA~1\R\R-24~1.0\doc\html\index.html' yourself
> coex <- fromGXL(file(system.file("XML/conn.gxl",package="RBGL"),
open="r"))
Error: could not find function "fromGXL"
> maxClique(coex)
Error: could not find function "maxClique"
> coex <- fromGXL(file(system.file("XML/hcs.gxl",package="RBGL"), open="r"))
Error: could not find function "fromGXL"
> maxClique(coex)
Error: could not find function "maxClique"

*Again need your advice. *

Thanks in Advance,
JJ
---


On 11/27/06, Sean Davis <sdavis2@mail.nih.gov> wrote:
>
> On Monday 27 November 2006 03:02, Rough Jade wrote:
> > Dear All,
> >
> >
> > I added packages using :Install Packages from Local Zip files.
> > I have downloaded Ruuid,RGraphviz,graph from BioConductor:
>
> Your best bet for installing packages from bioconductor is to follow the
> installation instructions here:
>
> http://www.bioconductor.org/docs/install-howto.html
>
> That way, you get the version that matches your machine type, OS, and
> version
> of R.  Give that a try.  If that doesn't work, then you can simply paste
> in
> the commands that you tried along with error messages.  Also, be sure that
> for all emails to this list or R-help to include the output of
> sessionInfo().
>
> Sean
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor@stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives:
> http://news.gmane.org/gmane.science.biology.informatics.conductor
>



-- 
Lec.J. Joshua Thomas
School of Computing & Engineering.
KDU College PG Campus
Research Student
University Sains Malaysia

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