Hi, 
We have custom Affy chips based on proprietary sequences from a species
which isn't well represented in public databases. We've assigned GO
annotations ourselves using InterProScan and other methods, because the
level of annotations of related species in public databases is also very
poor.

Is it possible to feed predetermined GO annotations into GOstats (or any
other package which performs GO analyses), or are LocusLink IDs always
required to initialise the GO mappings?

I'm a BioConductor newbie - Thanks to anyone who can help.

Anar




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