Hi,Dr. Durinck:


I do need to get a list back from getBM function in biomaRt package, I read
your feedback about getBM when the probe is long.
http://article.gmane.org/gmane.science.biology.informatics.conductor/9172/match=biomart+rmysql+mode
but can you tell me how to get a list back using bomaRt RMySQL mode?
I have a 250 length entrezgene id and try to get back
genelistM <- getBM(attributes =
c("entrezgene","go","uniprot_swissprot_accession", "refseq_dna"), filters =
"entrezgene",
values = ll, mart = mart, na.value =
"&nbsp;")

length(ll)
250
ll <- getLL(probe,data = "Rosetta")

I cannot get back in list, otherwise it will tell me wrong.

Thanks

Shiliang

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