Hi,

I am getting the following error when running simpleaffy qc for Rhesus
chips.
Error in qc.affy(unnormalised, ...) : I'm sorry, I do not know about chip
type: rhesuscdf

sessionInfo()
Version 2.3.0 (2006-04-24)
i386-pc-mingw32

attached base packages:
[1] "splines"   "tools"     "methods"   "stats"     "graphics"  "grDevices"
"utils"     "datasets"  "base"

other attached packages:
 rhesuscdf simpleaffy genefilter   survival       affy     affyio    Biobase

  "1.12.0"    "2.6.0"   "1.10.1"     "2.24"   "1.10.0"    "1.0.0"   "1.10.0"


rownames(get("alpha", envir = .qcEnv))
 [1] "atgenomecdf"    "ath1121501cdf"  "drosgenome1cdf" "hcg110cdf"
"hgfocuscdf"     "hgu133acdf"     "hgu133a2cdf"
 [8] "hgu133atagcdf"  "hgu133bcdf"     "hgu133plus2cdf" "hgu95acdf"
"hgu95av2cdf"    "hgu95bcdf"      "hgu95ccdf"
[15] "hgu95dcdf"      "hgu95ecdf"      "mgu74acdf"      "mgu74av2cdf"
"mgu74bcdf"      "mgu74bv2cdf"    "mgu74ccdf"
[22] "mgu74cv2cdf"    "mouse4302cdf"   "moe430acdf"     "mouse430a2cdf"
"mouse430b2cdf"  "mu11ksubacdf"   "mu11ksubbcdf"
[29] "porcinecdf"     "rae230acdf"     "rae230bcdf"     "rgu34acdf"
"rgu34bcdf"      "rgu34ccdf"      "ygs98cdf"
[36] "zebrafishcdf"   "rat2302cdf"

Seems that rhesuscdf is not in the list. How can I include this rhesuscdf to
qcEnv list?

Thanks in advance.

Best regards,
sharon



-- 
Visiting- graduate student,
UNICAM, Camerino, Italy

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