Hi, all:

 

   I did a microarray experiment on cDNA oligo slides in pair design
(treatment vs control). The difference of my two-color 55K spots array
with others is that there are two slides (A slide and B slide) as a set
like the Human Genome U133 (HG-U133) Set from affymetrics. My question
is when load the data into limmaGUI should I combine the two gpr file
into one to get my significant gene list or analyze them separately and
combine the two significant gene lists  as my final significant gene
list?

 

  Thanks!

 


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