Hi Bioconductorians,
   
  For my analyse , I use Limma in affylmGui... ( very practical).
  After to see the documentation about B , pvalues, M, A ...I selectionnned my interesting DEG ( Differential Expressed Genes)... but I have always the same questions: how many False Positif have I in my list of genes?Is it possible to estimate this proportion ?
  I know ( I believe ) that the usage of FDR in Limma's procedure adjusted only the p-value, and it's not available as in SAM analysis to estimate the proportion of FP..
   
  I would like your opinion on the problem..
  Thanks 
  Greg
   


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VOISIN greg. 
Bioinformaticien. 
Centre de recherche du CHUM. 
MONTREAL


		
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