I'm getting the following error message when trying to Affymetrix CEL
files into Bioconductor. Has anyone seen these errors? Any ideas on what
may be going wrong?
 
Thank you!

Sincerely,

Dennis
 
 
> dat <- ReadAffy()
> dat
Note: No locliblisting in R library /usr/lib/R/site-library Warning
message:
Failed to read repdatadesc at http://www.bioconductor.org/CRANrepository
in: loadRepDD(repURL, rddFile, method = method) Warning message:
Failed to read repdatadesc at
http://www.bioconductor.org/repository/release1.5/package in:
loadRepDD(repURL, rddFile, method = method) Warning message:
Failed to read repdatadesc at
http://www.bioconductor.org/repository/devel/package in:
loadRepDD(repURL, rddFile, method = method) Warning message:
Failed to read repdatadesc at http://www.bioconductor.org/data/metaData
in: loadRepDD(repURL, rddFile, method = method) Warning message:
Failed to read repdatadesc at
http://www.bioconductor.org/data/metaData-devel in: loadRepDD(repURL,
rddFile, method = method) Warning message:
Failed to read repdatadesc at
http://www.bioconductor.org/data/experimental/repos in:
loadRepDD(repURL, rddFile, method = method) Warning message:
Failed to read repdatadesc at
http://www.bioconductor.org/repository/Courses in: loadRepDD(repURL,
rddFile, method = method) Warning message:
Failed to read repdatadesc at
http://www.bioconductor.org/data/cdfenvs/repos in: loadRepDD(repURL,
rddFile, method = method) Warning message:
Failed to read repdatadesc at
http://www.bioconductor.org/data/probes/Packages in: loadRepDD(repURL,
rddFile, method = method) Warning message:
Failed to read repdatadesc at
http://www.bioconductor.org/repository/Omegahat in: loadRepDD(repURL,
rddFile, method = method) Warning message:
Failed to read repdatadesc at
http://www.bioconductor.org/repository/lindsey in: loadRepDD(repURL,
rddFile, method = method) Warning message:
Failed to read repdatadesc at
http://www.bioconductor.org/CRANrepository/src/contrib in:
loadRepDD(repURL, rddFile, method = method) Warning message:
Failed to read repdatadesc at
http://www.bioconductor.org/CRANrepository/bin/windows/contrib/2.1 in:
loadRepDD(repURL, rddFile, method = method) Warning message:
Failed to read repdatadesc at
http://www.bioconductor.org/repository/release1.5/package/Source in:
loadRepDD(repURL, rddFile, method = method) Warning message:
Failed to read repdatadesc at
http://www.bioconductor.org/repository/release1.5/package/Win32 in:
loadRepDD(repURL, rddFile, method = method) Warning message:
cannot open: HTTP status was '404 Not Found' 
Note: http://www.bioconductor.org/repository/devel/package/Source does
not seem to have a valid repository, skipping Warning messages:
 
Note: http://www.bioconductor.org/repository/devel/package/Win32 does
not seem to have a valid repository, skipping 
Error in install.packages2(cdfname, lib = lib) : 
        No repositories to search
In addition: Warning message:
Failed to read replisting at
http://www.bioconductor.org/repository/devel/package/Win32 in:
getReplisting(repURL, repFile, method = method) 
AffyBatch object
size of arrays=534x534 features (22284 kb)
cdf=Mu11KsubA (??? affyids)
number of samples=10
Note: No locliblisting in R library /usr/lib/R/site-library 
Warning message:
missing cdf environment ! in: show(list()) 
Warning message:
Failed to read repdatadesc at http://www.bioconductor.org/CRANrepository
in: loadRepDD(repURL, rddFile, method = method) 
Warning message:
Failed to read repdatadesc at
http://www.bioconductor.org/repository/release1.5/package in:
loadRepDD(repURL, rddFile, method = method) 
Warning message:
Failed to read repdatadesc at
http://www.bioconductor.org/repository/devel/package in:
loadRepDD(repURL, rddFile, method = method) 
Warning message:
Failed to read repdatadesc at http://www.bioconductor.org/data/metaData
in: loadRepDD(repURL, rddFile, method = method) 
Warning message:
Failed to read repdatadesc at
http://www.bioconductor.org/data/metaData-devel in: loadRepDD(repURL,
rddFile, method = method) 
Warning message:
Failed to read repdatadesc at
http://www.bioconductor.org/data/experimental/repos in:
loadRepDD(repURL, rddFile, method = method) 
Warning message:
Failed to read repdatadesc at
http://www.bioconductor.org/repository/Courses in: loadRepDD(repURL,
rddFile, method = method) 
Warning message:
Failed to read repdatadesc at
http://www.bioconductor.org/data/cdfenvs/repos in: loadRepDD(repURL,
rddFile, method = method) 
Warning message:
Failed to read repdatadesc at
http://www.bioconductor.org/data/probes/Packages in: loadRepDD(repURL,
rddFile, method = method) 
Warning message:
Failed to read repdatadesc at
http://www.bioconductor.org/repository/Omegahat in: loadRepDD(repURL,
rddFile, method = method) 
Warning message:
Failed to read repdatadesc at
http://www.bioconductor.org/repository/lindsey in: loadRepDD(repURL,
rddFile, method = method) 
Warning message:
Failed to read repdatadesc at
http://www.bioconductor.org/CRANrepository/src/contrib in:
loadRepDD(repURL, rddFile, method = method) 
Warning message:
Failed to read repdatadesc at
http://www.bioconductor.org/CRANrepository/bin/windows/contrib/2.1 in:
loadRepDD(repURL, rddFile, method = method) 
Warning message:
Failed to read repdatadesc at
http://www.bioconductor.org/repository/release1.5/package/Source in:
loadRepDD(repURL, rddFile, method = method) 
Warning message:
Failed to read repdatadesc at
http://www.bioconductor.org/repository/release1.5/package/Win32 in:
loadRepDD(repURL, rddFile, method = method) 
Warning message:
cannot open: HTTP status was '404 Not Found' 
Note: http://www.bioconductor.org/repository/devel/package/Source does
not seem to have a valid repository, skipping 
Warning messages:
1: Failed to read replisting at
http://www.bioconductor.org/repository/devel/package/Source in:
getReplisting(repURL, repFile, method = method) 
2: cannot open: HTTP status was '403 Forbidden' 
Note: http://www.bioconductor.org/repository/devel/package/Win32 does
not seem to have a valid repository, skipping 
Error in install.packages2(cdfname, lib = lib) : 
        No repositories to search
In addition: Warning message:
Failed to read replisting at
http://www.bioconductor.org/repository/devel/package/Win32 in:
getReplisting(repURL, repFile, method = method)
 

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