I am trying to get the significance p-value of the signal detection after I have run a gcrma bg correction and normalization.

I do not want to use the inline  mas5calls by Bolstad as I suppose this would defy the prior analysis of the gcrma and  sadly I can testify (as its manual suggests) :) that the package panp  by Peter Warren is targeted to HGU133A and HGU133-Plus-2.0 chipsets.


Is there any other way to get P/M/A and p-values for the detection call after I have run my gcrma mle on mouse 430 ver 2 chips?



Triantafyllos
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