Anyone seen this error with ABPkgBuilder (AnnBuilder) and knows how to resolve it?
 
 
To build a data annotation package, this piece of code usually works for me:
 
ABPkgBuilder(baseName = myBase, srcUrls = mySrcUrls, baseMapType = myBaseType,
pkgName = myPkgName, pkgPath = myDir,
organism = "Homo sapiens", version = "2.0.0",
author = list(author = "Henrik Hornshoj <henrikh.jensen@agrsci.dk <mailto:henrikh.jensen@agrsci.dk> >",
maintainer = "Henrik Hornshoj <henrikh.jensen@agrsci.dk <mailto:henrikh.jensen@agrsci.dk> >"),
fromWeb = TRUE)
 
 
But today I suddenly get the following error:
 
 
Attaching package: 'GO'
 

        The following object(s) are masked from package:AnnBuilder :
 
         GO 
 
Warning message:
Built for UCSC is not valid! in: getUCSCBuilt(organism) 
Failed to get data from URL: ftp://ftp.genome.ad.jp/pub/kegg/pathways/hsa/hsa00191.gene <ftp://ftp.genome.ad.jp/pub/kegg/pathways/hsa/hsa00191.gene>  
Failed to get data from URL: ftp://ftp.genome.ad.jp/pub/kegg/pathways/hsa/hsa00192.gene <ftp://ftp.genome.ad.jp/pub/kegg/pathways/hsa/hsa00192.gene>  
.
.
Failed to get data from URL: ftp://ftp.genome.ad.jp/pub/kegg/pathways/hsa/hsa99998.gene <ftp://ftp.genome.ad.jp/pub/kegg/pathways/hsa/hsa99998.gene>  
Failed to get data from URL: ftp://ftp.genome.ad.jp/pub/kegg/pathways/hsa/hsa99999.gene <ftp://ftp.genome.ad.jp/pub/kegg/pathways/hsa/hsa99999.gene>  
[1] "4010 2 2"
Error in all(is.na(annotation[, "GO"])) : subscript out of bounds

 
Any suggestions are welcome!!
 
Regards,
Henrik Hornshøj

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