 Hi All,

I am trying to analyze affy data for strain, treatment and their interaction
effects (RMA normalized, log2 expression values). The design looks like

   strain A --> treatment 1       strain B --> treatment 1
                    treatment 2                         treatment 2

so, I used anova(aov(expra ~ strain + treatment + strain*treatment, m)),
where m <- data.frame(strain, treatment, expr)

I have got the corresponding pvalues for strain, treatment & interaction
effects( this for all the probsets).  Now, I would like to separate the
number of significant probesets for strain A and strain B from strain effect
(I would like to do the same for treatment effect).  How can I do this? Any
help is very much appreciated.

Thanks in Advance.
Regards,
 Sharon

	[[alternative HTML version deleted]]

