Dear Morten Mattingsdal 
 
Sorry to bother you with this, but I just wondered if you ever managed to solve you problem with building a data annotation package (see below)?
 
I am trying to do something similiar, although not with an affy chip, and I get the same error as you:
 
'no direct or inherited method for function 'baseFile<-' for this call'
 
Kind regards,
Henrik Hornshøj
 
Department of Genetics and Biotechnology
Danish Institute of Agricultural Sciences.
 
 

[BioC] affymetrix pig annotation data

Morten Mattingsdal morten.mattingsdal at student.uib.no <mailto:bioconductor%40stat.math.ethz.ch?Subject=%5BBioC%5D%20affymetrix%20pig%20annotation%20data&In-Reply-To=> 
Mon Nov 14 18:28:32 CET 2005 

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________________________________

Hello open-source spirits,

Im trying to build an annotation data library for the Sus scrofa (common 
pig) affymetrix chip: GeneChip® Porcine Genome Array
http://www.affymetrix.com/products/arrays/specific/porcine.affx

but Im not very sucessful in doing so.. my error is

Error in "baseFile<-"(`*tmp*`, value = 
"C:\\DOCUME~1\\mortema\\LOCALS~1\\Temp\\Rtmp2376\\tempFile26288") :
        no direct or inherited method for function 'baseFile<-' for this 
call

and I dont know what this is trying so tell me. My imput is probe ID in 
coloum 1 and genbank acc.nr in coloum 2.
"Ssc.11.1.S1_at"    "NM_213802.1"
and I have succesfully build packages before with human and mouse. But 
this is my first go at pig.

Does anyone have this library already build or can someone help me build 
it ?

(im deeply sorry if this is already listed in the metadata dir at 
bioconductor. But cant find anything related to pig)

best
morten


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