Hello all!

I am trying to run some DE analysis on a set of microarry expression
data.  I have 8 paired chips, 4 with treatment and 4 without treatment.

When I used the same 'eset_rma' and 'eset.cl' objects with the 'sam'
function from the siggnes package, they seemed to work fine.  I couldn't
discern from the siggenes vignette if there were changes that I had to
make to the .cl file to have EBAM work.  Any suggestions?

Thanks in advance for any help or suggestions!!
-Nick

>pData(eset_rma)
                sample
NE_MDM-INF1.CEL      1
NE_MDM-INF2.CEL      2
NE_MDM-INF3.CEL      3
NE_MDM-INF4.CEL      4
NE_MDM1.CEL          5
NE_MDM2.CEL          6
NE_MDM3.CEL          7
NE_MDM4.CEL          8

>eset.cl
[1]  1  2  3  4 -1 -2 -3 -4

>find.out <- find.a0(eset_rma, eset.cl)
EBAM Analysis for the two class paired case.

Error in xy.coords(x, y) : 'x' and 'y' lengths differ
In addition: Warning message:
NaNs produced in: qnorm(p, mean, sd, lower.tail, log.p) 
Error during wrapup: unable to open connection


	[[alternative HTML version deleted]]

