Hi,
 
I’ve been trying to create an annotation package using AnnBuilder but an
error keeps appearing:
 
Warning message:
Built for UCSC is not valid! in: getUCSCBuilt(organism) 
Error in loadFromUrl(srcUrls[i]) : URL
ftp://ftp.ncbi.nih.gov/repository/UniGene/Homo_sapiens/Hs.data.gz is
incorrect or the target site is not responding!
 
On Wed, 7 Dec 2005, Anja Schiel also posted the same problem using mouse
annotation. At that time the unavailability of the Unigene site was the
problem but in this case the URL can be directly accessed with no problem.
My ABPkgBuilder function and system info are:
 
mySrcUrls <- getSrcUrl("all", "Homo sapiens")
 
ABPkgBuilder(baseName = myBase,  baseMapType = myBaseType, srcUrls =
mySrcUrls, pkgName = "Human.annot" , pkgPath = mydir, organism ="Homo
sapiens", version = "1.1.0", author = list(author= "Toni Julià", maintainer
= "ajulia[AT]vhebron.net"), fromWeb=T)  
 
 
sessionInfo()
R version 2.1.0, 2005-04-18, i386-pc-mingw32 
 
attached base packages:
[1] "tools"     "methods"   "stats"     "graphics"  "grDevices" "utils"    
[7] "datasets"  "base"     
 
other attached packages:
        GO AnnBuilder   annotate        XML    Biobase 
   "1.8.2"    "1.8.0"   "1.5.16"   "0.97-8"   "1.5.12"
 
 
What could be going wrong?
 
Thanks for your help!
 
 
Toni
 
 
 
 
Antonio Julià 
Unitat de Recerca de Reumatologia (URR)
Hospital Universitari Vall d'Hebron 
Pg Vall d'Hebron, 119-129
08035, Barcelona, SPAIN
Tel: + 34 93 274 6200
e-mail: ajulia@vhebron.net
 

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