Dear Jianhua and others, 

 

I'm running R.2.1.1 with version 1.5.31 of AnnBuilder (1.6.2 is not
available on Bioconductor-page as a windows-version . as it gives an
error-message).

 

Since I'm having trouble building a package I was debugging for the last
couple of days and there seems to be a problem with 

the url-file-system in UniGene.

 

getOption("AnnBuilderSourceUrls") gives me
"ftp://ftp.ncbi.nih.gov/repository/UniGene" as an URL for UG, but this isn't
working

since the file system has now subfolders "Homo_sapiens" etc. 

 

In your function getUGBuilt

function (organism, url = "ftp://ftp.ncbi.nih.gov/repository/UniGene") 

{

    ..

}

the url is also hard-coded and this causes an error in reading the
Hs.info-file under ftp://ftp.ncbi.nih.gov/repository/UniGene/Homo_sapiens.

 

Here my question now . is there a new version which fixes this problem or
can you give me advice on how I can fix it?

I wouldn't want to rewrite all these functions though .

 

Thank you very much.

Daniela

 

 


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