Hi, List,
 
I have 17 affymetrix .cel files and ran RMA analysis on them. Now I want to run SAM analysis(unpaired, 3 normal tissues and 14 diseased tissues)  on the RMA data with R2.1.1. 
I have installed the samr package. 
 
Questions: How to run the SAM analysis after the RMA analysis? The better, the more detailed explanations.
 
Any advice and suggestions will be much appreciated.
 
 


Best Regards
 
Han Weinong  
hanweinong@yahoo.com

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