Hello,

*question 1: GOstats*
When I try to use library(GOstats) in R2.1.1 (with recent installation 
of BioC: getBioC()), I get following message:

Loading required package: graph
Error: package 'graph' could not be loaded
In addition: Warning message:
there is no package called 'graph' in: library(pkg, character.only = 
TRUE, logical = TRUE, lib.loc = lib.loc)

Where can I find the graph package (I haven't found it on the CRAN website)?

*question 2: hgu133a*
Is it possible that the hgu133a package is not up to date: for example 
when I give the command aafSymbol("213268_at","hgu133a") following 
results appear:
/*PER3 */when I use R 2.1.1 (with recent installation of BioC: 
getBioC()) and */UTS2/* when I use R 2.0.1 (with recent installation of 
BioC: getBioC("all")). However, on the Ensembl website 213268_at = 
*/CAMTA1/*.

Another error message appears with R 2.0.1 when I give the command: 
 >aafSymbol("213268_at","hgu133a"):

Loading required package: reposTools
[1] "_You have package hgu133a but the incorrect version_"
An object of class "aafList"
[[1]]
An object of class "aafSymbol"
[1] "UTS2"

*question 3: BioC-R2.1.1*
The commands Install or  Update packages from Bioconductor  under the 
Packages menu-command-bar is not available anymore in the R2.1.1 version 
compared to the R2.0.1 version? Is it normal or did I forgot something 
when I installed BioC or R?

Thank you in advance,
Best regards,
Katleen

-- 
*dr. ir. Katleen De Preter*
Center for Medical Genetics Ghent (CMGG)
Ghent University Hospital
Medical Research Building (MRB), 2nd floor, room 120.038
De Pintelaan 185, B-9000 Ghent, Belgium
+32 9 240 5533 (phone) | +32 9 240 6549 (fax)
http://medgen.ugent.be
Katleen.DePreter@UGent.be <mailto:Katleen.DePreter@UGent.be>

	[[alternative HTML version deleted]]

