Jim,

	Thanks as always for your prompt reply.
I tried it, but it didn't work.

Here is a record of the session.

Best wishes,
Rich
	

library(reposTools)
 > install.packages2("mgu74av2probe")
Warning message:
cannot open: HTTP status was `403 Forbidden'
Note: http://www.bioconductor.org/repository/devel/package/Win32 does 
not seem to have a valid repository, skipping
Note: You did not specify a download type.  Using a default value of: 
Source
This will be fine for almost all users

Error in if ((is.null(deps)) || (length(deps) == 0) || (deps == "")) 
return(NULL) :
	missing value where TRUE/FALSE needed
 > ls()
[1] "Data"                  "affinity.spline.coefs" "last.warning"      
     "mgu74av2cdf"
 > ls(packages:mgu74av2probe)
Error in try(name) : Object "mgu74av2probe" not found
Error in as.environment(pos) : no item called "packages:mgu74av2probe" 
in the search list

On Jun 27, 2005, at 1:17 PM, James MacDonald wrote:

> Hi Rich,
>
> The package is supposed to get downloaded and installed for you, but
> evidently there is some more work to be done there. What you need is 
> the
> mgu74av2probe package, which is different from the mgu74av2 package. 
> For
> now you can install by hand and go from there. I would recommend using
> reposTools:
>
> library(reposTools)
> install.packages2("mgu74av2probe")
>
> Should get you going.
>
> Best,
>
> Jim
>
>
>
>>>> Richard Friedman <friedman@cancercenter.columbia.edu> 6/27/2005
> 12:53:16 PM >>>
> Dear Bioconductor list,
>
> 	I am returning to using bioconductor after
> a long break and wish to use gcrma. I
> get the error message
>   eset<-gcrma(Data)
> Computing affinitiesError in library(probepackagename, character.only =
>
> TRUE) :
> 	There is no package called 'mgu74av2probe'
>
> I have previously tried library(mgu74av2)
>
> How can I load this library?
> I have it installed.
>
> I am running under Mac OS X.
>
> Thanks and best wishes,
> Rich
> ------------------------------------------------------------
> Richard A. Friedman, PhD
> Associate Research Scientist
> Herbert Irving Comprehensive Cancer Center
> Oncoinformatics Core
> Lecturer
> Department of Biomedical Informatics
> Box 95, Room 130BB or P&S 1-420C
> Columbia University Medical Center
> 630 W. 168th St.
> New York, NY 10032
> (212)305-6901 (5-6901) (voice)
> friedman@cancercenter.columbia.edu
> http://cancercenter.columbia.edu/~friedman/
>
> " I know what is going to happen next in 'Middlemarch'.
> Mr. Featherstone left Fred his money,
> and the lady who wants his money is going to tell everybody
> that Fred gambles and it is going to be in all the papers in
> Middlemarch."
> Rose Friedman, age 8
>
> 	[[alternative text/enriched version deleted]]
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor@stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
>
>
> **********************************************************
> Electronic Mail is not secure, may not be read every day, and should 
> not be used for urgent or sensitive issues.
>
------------------------------------------------------------
Richard A. Friedman, PhD
Associate Research Scientist
Herbert Irving Comprehensive Cancer Center
Oncoinformatics Core
Lecturer
Department of Biomedical Informatics
Box 95, Room 130BB or P&S 1-420C
Columbia University Medical Center
630 W. 168th St.
New York, NY 10032
(212)305-6901 (5-6901) (voice)
friedman@cancercenter.columbia.edu
http://cancercenter.columbia.edu/~friedman/

" I know what is going to happen next in 'Middlemarch'.
Mr. Featherstone left Fred his money,
and the lady who wants his money is going to tell everybody
that Fred gambles and it is going to be in all the papers in 
Middlemarch."
Rose Friedman, age 8


	[[alternative text/enriched version deleted]]

