[BioC] Cannot Install ‘VariantTools’ Package on Mac

[Dan Tenenbaum]

Hi Quine,

VariantTools is only supported on Linux.

Dan


----- Original Message -----
> From: "Quine [guest]" <guest at bioconductor.org>
> To: bioconductor at r-project.org, moocphil at yahoo.com
> Sent: Friday, May 30, 2014 10:40:06 AM
> Subject: Cannot Install ‘VariantTools’ Package on Mac
> 
> Can someone please provide help on installing ‘VariantTools’
> package on Mac? Output shown below:
> 
>  -- output of sessionInfo():
> 
> > biocLite("VariantTools")
> BioC_mirror: http://bioconductor.org
> Using Bioconductor version 2.14 (BiocInstaller 1.14.2), R
>   version 3.1.0.
> Installing package(s) 'VariantTools'
> 
>    package ‘VariantTools’ is available as a source package but
>    not as a binary
> 
> Warning message:
> package ‘VariantTools’ is not available (for R version 3.1.0)
> 
> > sessionInfo()
> R version 3.1.0 (2014-04-10)
> Platform: x86_64-apple-darwin10.8.0 (64-bit)
> 
> locale:
> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
> 
> attached base packages:
> [1] parallel  stats     graphics  grDevices utils     datasets
>  methods
> [8] base
> 
> other attached packages:
>  [1] org.Hs.eg.db_2.14.0
>  [2] RSQLite_0.11.4
>  [3] DBI_0.2-7
>  [4] VariantAnnotation_1.10.1
>  [5] Rsamtools_1.16.0
>  [6] Biostrings_2.32.0
>  [7] XVector_0.4.0
>  [8] TxDb.Hsapiens.UCSC.hg19.knownGene_2.14.0
>  [9] GenomicFeatures_1.16.1
> [10] AnnotationDbi_1.26.0
> [11] Biobase_2.24.0
> [12] GenomicRanges_1.16.3
> [13] GenomeInfoDb_1.0.2
> [14] IRanges_1.22.7
> [15] BiocGenerics_0.10.0
> [16] BiocInstaller_1.14.2
> 
> loaded via a namespace (and not attached):
>  [1] BatchJobs_1.2           BBmisc_1.6
>               BiocParallel_0.6.1
>  [4] biomaRt_2.20.0          bitops_1.0-6            brew_1.0-6
>  [7] BSgenome_1.32.0         codetools_0.2-8         digest_0.6.4
> [10] fail_1.2                foreach_1.4.2
>           GenomicAlignments_1.0.1
> [13] iterators_1.0.7         plyr_1.8.1              Rcpp_0.11.1
> [16] RCurl_1.95-4.1          rtracklayer_1.24.1      sendmailR_1.1-2
> [19] stats4_3.1.0            stringr_0.6.2           tools_3.1.0
> [22] XML_3.98-1.1            zlibbioc_1.10.0
> > 
> -------------------------------------------------------
> 
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