[BioC] QQ plot 450k data

[James W. MacDonald]

Hi Khadeeja,

The distribution of p-values under the null hypothesis should always be 
uniform.

Best,

Jim


On 5/19/2014 5:14 PM, khadeeja ismail wrote:
> Hi All,
>
> What would be the right distribution to use as expected p values in a QQ plot for results from 450k analysis? I have been searching, but not able to find in mentioned anywhere.
>
>
> Thanks in advance,
>
> Khadeeja
> 	[[alternative HTML version deleted]]
>
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-- 
James W. MacDonald, M.S.
Biostatistician
University of Washington
Environmental and Occupational Health Sciences
4225 Roosevelt Way NE, # 100
Seattle WA 98105-6099