[BioC] graphite biopax conversion code?
Ryan C. Thompson
rct at thompsonclan.org
Thu May 15 00:49:58 CEST 2014
Hello,
I am a happy user of the graphite package, but I would like to have the
capability to use additional pathways not provided in the graphite
package. I have these pathways in BioPAX format (downloaded from
WikiPathways). I notice that the graphite paper talks about conversion
BioPAX to SIF, but the package does not seem to provide a method to do
the conversion, but rather simply provides the results of that
conversion on several common sources of pathway data. Would it also be
possible to include the conversion code, so that I could use any BioPAX
pathway data that I choose with graphite?
Thanks,
-Ryan Thompson
More information about the Bioconductor
mailing list