[BioC] error in loading minfi package
guest [guest]
guest at bioconductor.org
Wed May 7 15:50:05 CEST 2014
Dear users,
I tried to load minfi package, it has an error message
> library(minfi)
Loading required package: reshape
Error in FUN("expand"[[1L]], ...) : lazy-load database 'P' is corrupt
In addition: Warning messages:
1: package âreshapeâ was built under R version 3.1.0
2: In FUN("expand"[[1L]], ...) : restarting interrupted promise evaluation
3: In FUN("expand"[[1L]], ...) : internal error -3 in R_decompress1
After I installed reshape package, it still has the error.
Please help to let me know what's it wrong.
Thanks a lot
-- output of sessionInfo():
> sessionInfo()
R version 3.0.2 (2013-09-25)
Platform: x86_64-apple-darwin10.8.0 (64-bit)
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] parallel stats graphics grDevices utils datasets methods base
other attached packages:
[1] lumi_2.14.2 BiocInstaller_1.12.1 VariantAnnotation_1.8.13 Rsamtools_1.14.3 Biostrings_2.30.1 GenomicRanges_1.14.4
[7] XVector_0.2.0 IRanges_1.20.7 ggplot2_0.9.3.1 phyloseq_1.6.1 picante_1.6-2 nlme_3.1-117
[13] ape_3.1-1 ade4_1.6-2 knitr_1.5 vegan_2.0-10 lattice_0.20-29 permute_0.8-3
[19] biom_0.3.12 metagenomeSeq_1.5.47 devtools_1.5 gplots_2.13.0 RColorBrewer_1.0-5 matrixStats_0.8.14
[25] limma_3.18.13 Biobase_2.22.0 BiocGenerics_0.8.0
loaded via a namespace (and not attached):
[1] affy_1.40.0 affyio_1.30.0 annotate_1.40.1 AnnotationDbi_1.24.0 base64_1.1 beanplot_1.1
[7] biomaRt_2.18.0 bitops_1.0-6 BSgenome_1.30.0 bumphunter_1.2.0 caTools_1.17 cluster_1.15.2
[13] codetools_0.2-8 colorspace_1.2-4 DBI_0.2-7 dichromat_2.0-0 digest_0.6.4 doRNG_1.6
[19] evaluate_0.5.5 foreach_1.4.2 formatR_0.10 gdata_2.13.3 genefilter_1.44.0 GenomicFeatures_1.14.5
[25] grid_3.0.2 gtable_0.1.2 gtools_3.4.0 httr_0.3 igraph_0.7.1 illuminaio_0.4.0
[31] iterators_1.0.7 itertools_0.1-3 KernSmooth_2.23-12 labeling_0.2 locfit_1.5-9.1 MASS_7.3-32
[37] Matrix_1.1-3 mclust_4.3 memoise_0.2.1 methylumi_2.8.0 mgcv_1.7-29 minfi_1.8.9
[43] multtest_2.18.0 munsell_0.4.2 nleqslv_2.1.1 nor1mix_1.1-4 pkgmaker_0.20 plyr_1.8.1
[49] preprocessCore_1.24.0 proto_0.3-10 R.methodsS3_1.6.1 Rcpp_0.11.1 RCurl_1.95-4.1 registry_0.2
[55] reshape_0.8.5 reshape2_1.4 RJSONIO_1.2-0.2 rngtools_1.2.4 RSQLite_0.11.4 rtracklayer_1.22.7
[61] scales_0.2.4 siggenes_1.36.0 splines_3.0.2 stats4_3.0.2 stringr_0.6.2 survival_2.37-7
[67] tools_3.0.2 whisker_0.3-2 XML_3.95-0.2 xtable_1.7-3 zlibbioc_1.8.0
>
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