[BioC] GEOquery error

Royce W. Fletcher royce at rwfletcher.com
Thu May 1 22:46:51 CEST 2014


getGEO seems to look for the gpl90.soft file in a random location; failing
to find the file it then goes on to report an error.

>From KnitHTML:

geoq <- getGEO("GSE9514")
## Found 1 file(s)
## GSE9514_series_matrix.txt.gz
## File stored at: 
## C:\DOCUME~1\ROYCEW~1.FLE\LOCALS~1\Temp\RtmpYNLMIX/GPL90.soft
## Error: only 0's may be mixed with negative subscripts

The file C:\DOCUME~1\ROYCEW~1.FLE\LOCALS~1\Temp\RtmpYNLMIX  does not exist
on my system.

Royce W. Fletcher
Royce W. Fletcher, Inc.
637 Seabright Avenue
Santa Cruz, CA  95062
Telephone: 831-426-6470
Facsimile: 831-429-1889
Email: royce at rwfletcher.com
Website: www.rwfletcher.com

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