[BioC] readDGE
Chinh Hoan
Chinh.Hoang at utsouthwestern.edu
Thu Jun 12 17:36:06 CEST 2014
Hello all,
Below is my problem with readDGE. Could you please tell what should I do to fix the problem? thanks!
Chinh
targets <- readTargets()
targets
files groups description
1 S3WT_tophatcount.txt CT TAM
2 S4WT_tophatcount.txt CT TAM
3 S1lrh1KO_tophatcount.txt KO TAM
4 S2lrh1KO_tophatcount.txt KO TAM
> y <- readDGE(targets)
Warning messages:
1: In `$.data.frame`(x$samples, group) :
Name partially matched in data frame
2: In `$.data.frame`(x$samples, group) :
Name partially matched in data frame
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