[BioC] readDGE

Chinh Hoan Chinh.Hoang at utsouthwestern.edu
Thu Jun 12 17:36:06 CEST 2014


Hello all,
Below is my problem with readDGE. Could you please tell what should I do to fix the problem? thanks!
Chinh
 targets <- readTargets()
 targets
                     files groups description
1     S3WT_tophatcount.txt     CT         TAM
2     S4WT_tophatcount.txt     CT         TAM
3 S1lrh1KO_tophatcount.txt     KO         TAM
4 S2lrh1KO_tophatcount.txt     KO         TAM
> y <- readDGE(targets)
Warning messages:
1: In `$.data.frame`(x$samples, group) :
  Name partially matched in data frame
2: In `$.data.frame`(x$samples, group) :
  Name partially matched in data frame

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