[BioC] Installing Workflows for Oligonucleotide arrays

Rinaldy K [guest] guest at bioconductor.org
Tue Jun 10 11:40:14 CEST 2014

Is there a way to install workflows for microarray analysis on Bioconductor v2.14?

or should i downgrade to bioconductor v2.13?

> source("http://bioconductor.org/workflows.R")
Bioconductor version 2.14 (BiocInstaller
  1.14.2), ?biocLite for help
Error: BiocInstaller:::BIOC_VERSION == "2.13" is not TRUE

 -- output of sessionInfo(): 

> sessionInfo()
R version 3.1.0 (2014-04-10)
Platform: x86_64-w64-mingw32/x64 (64-bit)

[1] LC_COLLATE=English_United States.1252  LC_CTYPE=English_United States.1252   
[3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C                          
[5] LC_TIME=English_United States.1252    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] BiocInstaller_1.14.2

loaded via a namespace (and not attached):
 [1] affyio_1.32.0        base64_1.1           Biobase_2.24.0      
 [4] BiocGenerics_0.10.0  Biostrings_2.32.0    bit_1.1-12          
 [7] codetools_0.2-8      digest_0.6.4         ellipse_0.3-8       
[10] ff_2.2-13            foreach_1.4.2        GenomeInfoDb_1.0.2  
[13] GenomicRanges_1.16.3 grid_3.1.0           illuminaio_0.6.0    
[16] IRanges_1.22.8       iterators_1.0.7      lattice_0.20-29     
[19] Matrix_1.1-3         matrixStats_0.10.0   mvtnorm_0.9-99992   
[22] parallel_3.1.0       R.methodsS3_1.6.1    Rcpp_0.11.2         
[25] RcppEigen_0.  stats4_3.1.0         tools_3.1.0         
[28] VGAM_0.9-4           XVector_0.4.0        zlibbioc_1.10.0   

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