[BioC] The installation of XVector

Hervé Pagès hpages at fhcrc.org
Mon Apr 21 07:33:47 CEST 2014


Hi,

On 04/20/2014 08:29 PM, GUAN Rui [guest] wrote:
> Error in dyn.load(file, DLLpath = DLLpath, ...) :
> unable to load shared object
> '/guanrui/soft/R-3.1.0/library/XVector/libs/XVector.so':
> /guanrui/soft/R-3.1.0/library/XVector/libs/XVector.so: undefined symbol: hold_IRanges
>      Error: loading failed
>      Execution halted
>      ERROR: loading failed"

How are you trying to install this? Are you sure your version of IRanges
is current?

Always use biocLite() to install Bioconductor packages.
See http://bioconductor.org/install/

Cheers,
H.

>
>   -- output of sessionInfo():
>
> R version 3.1.0 (2014-04-10)
> Platform: x86_64-unknown-linux-gnu (64-bit)
>
> locale:
> [1] LC_CTYPE=en_US.iso885915       LC_NUMERIC=C
> [3] LC_TIME=en_US.iso885915        LC_COLLATE=en_US.iso885915
> [5] LC_MONETARY=en_US.iso885915    LC_MESSAGES=en_US.iso885915
> [7] LC_PAPER=en_US.iso885915       LC_NAME=C
> [9] LC_ADDRESS=C                   LC_TELEPHONE=C
> [11] LC_MEASUREMENT=en_US.iso885915 LC_IDENTIFICATION=C
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
>
> --
> Sent via the guest posting facility at bioconductor.org.
>

-- 
Hervé Pagès

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
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