[BioC] installing flowDensity

[Raghu]

This is the output when installing in R v3.1 beta (ubuntu 12.04)
=================================================
> source('http://bioconductor.org/biocLite.R')
Bioconductor version 2.13 (BiocInstaller 1.12.0), ?biocLite for help
> biocLite('flowDensity')

BioC_mirror: http://bioconductor.org
Using Bioconductor version 2.13 (BiocInstaller 1.12.0), R version 3.1.0.
Installing package(s) 'flowDensity'
Warning message:
package ‘flowDensity’ is not available (for R version 3.1.0 beta)
> sessionInfo()
R version 3.1.0 beta (2014-03-28 r65330)
Platform: x86_64-pc-linux-gnu (64-bit)

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
 [9] LC_ADDRESS=C               LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] BiocInstaller_1.12.0

loaded via a namespace (and not attached):
[1] tools_3.1.0
> biocinstallRepos()
                                               BioCsoft
           "http://bioconductor.org/packages/2.13/bioc"
                                                BioCann
"http://bioconductor.org/packages/2.13/data/annotation"
                                                BioCexp
"http://bioconductor.org/packages/2.13/data/experiment"
                                              BioCextra
          "http://bioconductor.org/packages/2.13/extra"
                                                   CRAN
                                "http://cran.fhcrc.org"

when trying to install in R v3.0 (this is in windows -7)
=================================================


> source('http://bioconductor.org/biocLite.R')
Bioconductor version 2.13 (BiocInstaller 1.12.0), ?biocLite for help
> biocLite('flowDensity')
BioC_mirror: http://bioconductor.org
Using Bioconductor version 2.13 (BiocInstaller 1.12.0), R version 3.0.3.
Installing package(s) 'flowDensity'
Warning message:
package ‘flowDensity’ is not available (for R version 3.0.3)
> sessionInfo()
R version 3.0.3 (2014-03-06)
Platform: i386-w64-mingw32/i386 (32-bit)

locale:
[1] LC_COLLATE=German_Germany.1252  LC_CTYPE=German_Germany.1252
[3] LC_MONETARY=German_Germany.1252 LC_NUMERIC=C
[5] LC_TIME=German_Germany.1252

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] BiocInstaller_1.12.0

loaded via a namespace (and not attached):
[1] tools_3.0.3
> biocinstallRepos()
                                               BioCsoft
           "http://bioconductor.org/packages/2.13/bioc"
                                                BioCann
"http://bioconductor.org/packages/2.13/data/annotation"
                                                BioCexp
"http://bioconductor.org/packages/2.13/data/experiment"
                                              BioCextra
          "http://bioconductor.org/packages/2.13/extra"
                                                   CRAN
                                "http://cran.fhcrc.org"
                                              CRANextra
                   "http://www.stats.ox.ac.uk/pub/RWin"



regards,
Raghu



On Thu 10 Apr 2014 07:31:13 AM CEST, Dan Tenenbaum wrote:
>
>
> ----- Original Message -----
>> From: "Raghu" <eraghu at mpi-muenster.mpg.de>
>> To: bioconductor at r-project.org
>> Sent: Wednesday, April 9, 2014 12:17:46 PM
>> Subject: [BioC] installing flowDensity
>>
>> Dear all,
>>
>> I am unable to install flowDensity package for cytometry analysis.
>> The
>> error in both 3.0 and 3.1 versions of R (ubuntu 12.04) shows
>>
>> using normal install.packages('flowDensity') and bioconductor
>> installtion, the error message is
>> Warning message:
>> package ‘flowDensity’ is not available (for R version 3.1.0 beta)
>
> Please show us how you tried to install the package.
>
> The recommended way is:
>
> source('http://bioconductor.org/biocLite.R')
> biocLite('flowDensity')
>
> In order to help us diagnose your problem, please also send the output of
> the sessionInfo() and biocinstallRepos() commands.
>
> Dan
>
>
>
>
>>
>> Thanks,
>> Raghu
>>
>> _______________________________________________
>> Bioconductor mailing list
>> Bioconductor at r-project.org
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>> Search the archives:
>> http://news.gmane.org/gmane.science.biology.informatics.conductor
>>



--
Raghu Erapaneedi
Max Planck Institute for Molecular Biomedicine
Mammalian Cell Signalling Laboratory
Department of Vascular Cell Biology
Roentgenstr-20
D-48149 Muenster
Germany
Tel:+49(0)251-70365-223