[BioC] org.Hs.eg.db
Krakno [guest]
guest at bioconductor.org
Mon Sep 30 11:41:04 CEST 2013
Dear all,
I have a problem with the "org.Hs.eg.db" package and would like to ask for some advice on how to get it to work. Currently, the problem I am facing is that R does not seem to recognize the package, see below for the context, error message and the sessionInfo().
I have been able to make "org.Mm.eg.db" and "org.Sc.sgd.db" work, but "org.Hs.eg.db" is not recognized.
I would be grateful for any help.
Thanks in advance.
/Krakno
-- output of sessionInfo():
> source("http://bioconductor.org/biocLite.R")
> biocLite("org.Hs.eg.db")
BioC_mirror: http://bioconductor.org
Using Bioconductor version 2.12 (BiocInstaller 1.10.3), R version 3.0.1.
Installing package(s) 'org.Hs.eg.db'
trying URL 'http://bioconductor.org/packages/2.12/data/annotation/bin/windows/contrib/3.0/org.Hs.eg.db_2.9.0.zip'
Content type 'application/zip' length 53311411 bytes (50.8 Mb)
opened URL
downloaded 50.8 Mb
Warning: cannot remove prior installation of package âorg.Hs.eg.dbâ
The downloaded binary packages are in
C:\Users\<...>\AppData\Local\Temp\RtmpE3cnj9\downloaded_packages
> library(org.Hs.eg.db)
Error in library(org.Hs.eg.db) :
there is no package called âorg.Hs.eg.dbâ
> sessionInfo()
R version 3.0.1 (2013-05-16)
Platform: x86_64-w64-mingw32/x64 (64-bit)
locale:
[1] LC_COLLATE=Swedish_Sweden.1252 LC_CTYPE=Swedish_Sweden.1252
[3] LC_MONETARY=Swedish_Sweden.1252 LC_NUMERIC=C
[5] LC_TIME=Swedish_Sweden.1252
attached base packages:
[1] parallel stats graphics grDevices utils datasets methods
[8] base
other attached packages:
[1] BSgenome.Hsapiens.UCSC.hg19_1.3.19 BSgenome_1.28.0
[3] Biostrings_2.28.0 GenomicRanges_1.12.5
[5] IRanges_1.18.4 org.Mm.eg.db_2.9.0
[7] RSQLite_0.11.4 DBI_0.2-7
[9] AnnotationDbi_1.22.6 Biobase_2.20.1
[11] BiocGenerics_0.6.0 BiocInstaller_1.10.3
loaded via a namespace (and not attached):
[1] stats4_3.0.1 tools_3.0.1
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