[BioC] cycle package question

[Steve Lianoglou]

Hi,

On Tue, Sep 17, 2013 at 5:54 AM, Alyaa Mahmoud <alyamahmoud at gmail.com> wrote:
> its from the "cycle" package
>
> the function only accepts expression set object, so I originally wanted to
> ask if its possible to change that

I see -- if this is the case, you should cc the maintainer of the
package who may not be watching these lists closely.

I've have CC'd him (Matthias) here.

HTH,
-steve

>
> so far, I have just converted the matrix into an expression set object
> (ExpressionSet(matrix))
>
> but my original question was if its possible to pass a matrix directly to
> the fdrfourier function because it can basically be used for any time
> series dataset not necessarily expression dataset
>
> thanks a lot Steve for your reply
>
>
> On Tue, Sep 17, 2013 at 3:50 PM, Steve Lianoglou
> <lianoglou.steve at gene.com>wrote:
>
>> Hi,
>>
>> On Tue, Sep 17, 2013 at 2:21 AM, Alyaa Mahmoud <alyamahmoud at gmail.com>
>> wrote:
>> > Dear BioC group
>> >
>> > Is there a way we can apply the function fdrfourier to an expression
>> matrix
>> > directly and not necessarily an expressionSet object ?? Please advise
>>
>> I'm not aware of the `fdrfourrier` function (what package is it in?)
>> but if you want to apply it on an ExpressionSet but the function
>> itself only accepts a matrix and if `e` is your ExpressionSet, can't
>> you just `fdrfourrier(exprs(e))`?
>>
>> -steve
>>
>> --
>> Steve Lianoglou
>> Computational Biologist
>> Bioinformatics and Computational Biology
>> Genentech
>>
>
>
>
> --
> Alyaa Mahmoud
>
> "Love all, trust a few, do wrong to none"- Shakespeare
>
>         [[alternative HTML version deleted]]
>
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-- 
Steve Lianoglou
Computational Biologist
Bioinformatics and Computational Biology
Genentech