[BioC] Error: package \'mzR\' could not be loaded

[Laurent Gatto]

Dear Siebolt,

You are using R 2.15.3 while Rcpp 0.10.4 has been build under 3.0.1;
this is likely the source of the problem.

Is it possible for you to install the latest version of R (i.e. 3.0) -
this would most likely fix you issue.

Best wishes,

Laurent

On 13 September 2013 11:47, Siebolt de Boer [guest]
<guest at bioconductor.org> wrote:
>
> Problem installing metaXCMS for Windows.
>
>  -- output of sessionInfo():
>
> After a few days trying to get metaXCMS working it didn't succeed.
>
> The problem is loading of a mzR ? There is a different version of Rcpp ?
>
> I hope someone can help me with this problem ?
>
> Thank you already for your help.
>
> Best, Wishes, Siebolt.
>
>> library(metaXCMS)
> Loading required package: cairoDevice
> Loading required package: RGtk2
> Loading required package: Biobase
> Loading required package: BiocGenerics
>
> Attaching package: ‘BiocGenerics’
>
> The following object(s) are masked from ‘package:stats’:
>
> xtabs
>
> The following object(s) are masked from ‘package:base’:
>
> anyDuplicated, cbind, colnames, duplicated, eval, Filter, Find, get, intersect, lapply, Map, mapply, mget, order, paste, pmax, pmax.int, pmin, pmin.int, Position, rbind, Reduce, rep.int, rownames, sapply,
> setdiff, table, tapply, union, unique
>
> Welcome to Bioconductor
>
> Vignettes contain introductory material; view with 'browseVignettes()'. To cite Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'.
>
> Loading required package: xcms
> Loading required package: mzR
> Loading required package: Rcpp
> Error : .onLoad failed in loadNamespace() for 'mzR', details:
> call: value[[3L]](cond)
> error: failed to load module Ramp from package mzR
> object '.setDummyField' not found
> In addition: Warning messages:
> 1: package ‘Rcpp’ was built under R version 3.0.1
> 2: In fun(libname, pkgname) :
> mzR has been built against a different Rcpp version
> than is installed on your system. This might lead to errors
> when loading mzR. If you encounter such issues, please send
> a report, including the output of sessionInfo() to the Bioc
> mailing list -- http://www.bioconductor.org/help/mailing-list.
> Error: package ‘mzR’ could not be loaded
>> license()
>
> This software is distributed under the terms of the GNU General
> Public License, either Version 2, June 1991 or Version 3, June 2007.
> The terms of version 2 of the license are in a file called COPYING
> which you should have received with
> this software and which can be displayed by RShowDoc("COPYING").
> Version 3 of the license can be displayed by RShowDoc("GPL-3").
>
> Copies of both versions 2 and 3 of the license can be found
> at http://www.R-project.org/Licenses/.
>
> A small number of files (the API header files listed in
> R_DOC_DIR/COPYRIGHTS) are distributed under the
> LESSER GNU GENERAL PUBLIC LICENSE, version 2.1 or later.
> This can be displayed by RShowDoc("LGPL-2.1"),
> or obtained at the URI given.
> Version 3 of the license can be displayed by RShowDoc("LGPL-3").
>
> 'Share and Enjoy.'
>
>> sessionInfo()
> R version 2.15.3 (2013-03-01)
> Platform: i386-w64-mingw32/i386 (32-bit)
>
> locale:
> [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 LC_MONETARY=English_United States.1252 LC_NUMERIC=C LC_TIME=English_United States.1252
>
> attached base packages:
> [1] stats graphics grDevices utils datasets methods base
>
> other attached packages:
> [1] Rcpp_0.10.4 Biobase_2.18.0 BiocGenerics_0.4.0 RGtk2_2.20.25 cairoDevice_2.19 BiocInstaller_1.8.3
>
> loaded via a namespace (and not attached):
> [1] tools_2.15.3
>
> --
> Sent via the guest posting facility at bioconductor.org.
>
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-- 
Laurent Gatto
- http://proteome.sysbiol.cam.ac.uk/lgatto/
Cambridge Centre for Proteomics
- http://www.bio.cam.ac.uk/proteomics
Using R/Bioconductor for proteomics data analysis
- http://lgatto.github.io/RforProteomics/