[BioC] the

[Martin Morgan]

The attachment in your original email did not come through, probably because it 
did not satisfy the types mentioned in the posting guide. Martin

On 10/30/2013 09:27 AM, Wang Peter wrote:
> sorry, i tried many versions,i can only list one of them:
>
>  > sessionInfo()
> R version 2.15.2 (2012-10-26)
> Platform: x86_64-redhat-linux-gnu (64-bit)
>
> locale:
>   [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
>   [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
>   [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
>   [7] LC_PAPER=C                 LC_NAME=C
>   [9] LC_ADDRESS=C               LC_TELEPHONE=C
> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
>
>
> On Wed, Oct 30, 2013 at 9:15 AM, Martin Morgan <mtmorgan at fhcrc.org
> <mailto:mtmorgan at fhcrc.org>> wrote:
>
>     On 10/29/2013 08:01 PM, Wang Peter wrote:
>
>         i try to output the quality files, but the perCycleQuality picture is vague
>
>
>         please see the attachment
>
>
>     Please see the posting guide
>
>     http://bioconductor.org/help/__mailing-list/posting-guide/
>     <http://bioconductor.org/help/mailing-list/posting-guide/>
>
>     for valid attachments:
>
>        "The following attachment types are accepted: png, pdf, rda/Rdata
>
>     and other necessary information, in particular the output of
>
>        sessionInfo()
>
>
>
>
>
>         i tried different R versions
>
>
>
>         library(ShortRead);
>
>         fastqfile="T2-1.fastq";
>
>         qa <- qa(dirPath=".", pattern=fastqfile, type="fastq");
>
>         report(qa, dest="qcReport", type="html");
>
>
>
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>     --
>     Computational Biology / Fred Hutchinson Cancer Research Center
>     1100 Fairview Ave. N.
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>
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> --
> shan gao
> Room 231(Dr.Fei lab)
> Boyce Thompson Institute for Plant Research
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-- 
Computational Biology / Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N.
PO Box 19024 Seattle, WA 98109

Location: Arnold Building M1 B861
Phone: (206) 667-2793