[BioC] ShortReadQ constructor
Martin Morgan
mtmorgan at fhcrc.org
Mon Oct 7 21:44:30 CEST 2013
On 10/07/2013 12:28 PM, Ivan Gregoretti wrote:
> Hello,
>
> Could somebody show an example of constructing a ShortReadQ object
> instance? I can't find an example in the documentation.
>
>
> For example, lets say that I have two records with the following ids,
> sequences, and Phred qualities
>
> c("read1", "read2")
> c("ACGT", "GGGGACT")
> c("HHHH", "HHHHHHH")
>
> How would you now construct the ShortReadQ instance?
Hi Ivan
ShortReadQ(DNAStringSet(c("ACGT", "GGGGACT")),
FastqQuality(c("HHHH", "HHHHHHH")),
BStringSet(c("read1", "read2")))
Martin
>
> Thank you,
>
> Ivan
>
>
>
>
> Ivan Gregoretti, PhD
> Bioinformatics
>
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