[BioC] how to get Entrez Gene ID from genomic coordinates
bvunild at gmail.com
Tue Nov 19 13:07:28 CET 2013
I have a batch of genomic coordinates, and I need to find all the genes (Entrez Gene ID) covered by those coordinates.
I am new to R, but I am able to use biomaRt in R to get various annotation of genes from gene ID lists.
Would it be possible to retrieve my IDs from the coordinates?
The coordinates are in the chr:start:end format; I need the genes from both the strand.
Thank you for the attention,
Molecular Medicine Lab
Padriciano 99, 34149 Trieste, Italy
marini at icgeb.org
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