[BioC] Unable to install hgu133plus2.db

Ellie McIntosh [guest] guest at bioconductor.org
Mon Nov 11 00:12:46 CET 2013

Hi Everybody,

I'm Ellie, having a package installation problem,
When installing the package hgu133plus2.db on my win7 laptop through Rstudio I receive the following error.
I'm  not sure what I need to do to fix this. 
I've reinstalled MySQL Lite and updated R but have the same issue:
"error: RS-DBI driver: (error in statement: near "s": syntax error)"

Anybody have a similar problem or Idea.

Thank You.

P.S. Output:
> library("hgu133plus2.db", lib.loc="C:/Users/Ellie's Angel/Documents/R/win-library/3.0")
Loading required package: AnnotationDbi
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport,
    clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply, parSapply,

The following object is masked from ‘package:stats’:


The following objects are masked from ‘package:base’:

    anyDuplicated, as.data.frame, cbind, colnames, duplicated, eval, Filter, Find,
    get, intersect, lapply, Map, mapply, match, mget, order, paste, pmax, pmax.int,
    pmin, pmin.int, Position, rank, rbind, Reduce, rep.int, rownames, sapply,
    setdiff, sort, table, tapply, union, unique, unlist

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with 'browseVignettes()'. To cite
    Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: org.Hs.eg.db
Loading required package: DBI

Error : .onLoad failed in loadNamespace() for 'hgu133plus2.db', details:
  call: sqliteExecStatement(con, statement, bind.data)
  error: RS-DBI driver: (error in statement: near "s": syntax error)
Error: package or namespace load failed for ‘hgu133plus2.db’

 -- output of sessionInfo(): 

R version 3.0.2 (2013-09-25)
Platform: x86_64-w64-mingw32/x64 (64-bit)

[1] LC_COLLATE=English_United States.1252  LC_CTYPE=English_United States.1252   
[3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C                          
[5] LC_TIME=English_United States.1252    

attached base packages:
[1] parallel  stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] org.Hs.eg.db_2.9.0   RSQLite_0.11.4       DBI_0.2-7            AnnotationDbi_1.22.6
[5] Biobase_2.20.1       BiocGenerics_0.6.0  

loaded via a namespace (and not attached):
[1] IRanges_1.18.4 stats4_3.0.2   tools_3.0.2   

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