[BioC] unable to install \"ALL\"
Dan Tenenbaum
dtenenba at fhcrc.org
Thu Nov 7 07:29:01 CET 2013
----- Original Message -----
> From: "xia yuan [guest]" <guest at bioconductor.org>
> To: bioconductor at r-project.org, summerxl at swu.edu.cn
> Sent: Wednesday, November 6, 2013 10:23:03 PM
> Subject: [BioC] unable to install \"ALL\"
>
>
> unable to install "ALL",please help me .
>
>
> -- output of sessionInfo():
>
> output:
> biocLite("ALL")
> BioC_mirror: http://bioconductor.org
> Using Bioconductor version 2.13 (BiocInstaller 1.12.0), R version
> 3.0.2.
> Installing package(s) 'ALL'
> trying URL
> 'http://bioconductor.org/packages/2.13/data/experiment/bin/windows/contrib/3.0/ALL_1.4.16.zip'
> Content type 'application/zip' length 11415170 bytes (10.9 Mb)
> opened URL
> downloaded 72 Kb
>
> Error in read.dcf(file.path(pkgname, "DESCRIPTION"), c("Package",
> "Type")) :
> cannot open the connection
> In addition: Warning messages:
> 1: In download.file(url, destfile, method, mode = "wb", ...) :
> downloaded length 73962 != reported length 11415170
> 2: In unzip(zipname, exdir = dest) : error 1 in extracting from zip
> file
> 3: In read.dcf(file.path(pkgname, "DESCRIPTION"), c("Package",
> "Type")) :
> cannot open compressed file 'ALL/DESCRIPTION', probable reason 'No
> such file or directory'
>
Sounds like the download is not working. Are you behind a proxy or firewall?
Try starting R like this:
R --internet2
and then running:
biocLite("ALL")
Dan
>
> --
> Sent via the guest posting facility at bioconductor.org.
>
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