[BioC] AnnotationHub resource down?
Dan Tenenbaum
dtenenba at fhcrc.org
Tue Nov 5 18:40:08 CET 2013
----- Original Message -----
> From: "James W. MacDonald" <jmacdon at uw.edu>
> To: Bioconductor at r-project.org
> Sent: Tuesday, November 5, 2013 9:38:53 AM
> Subject: [BioC] AnnotationHub resource down?
>
> I am getting the following error and warning when using
> AnnotationHub:
>
> > hub <- AnnotationHub()
> Error in value[[3L]](cond) :
> An error occured when parsing the JSON: Error in
> download.file(url,
> tmp, quiet = TRUE): cannot open URL
> 'http://annotationhub.bioconductor.org/ah/2.13/getLatestSnapshotDate'
> In addition: Warning message:
> In download.file(url, tmp, quiet = TRUE) :
> cannot open: HTTP status was '0 (null)'
>
> > sessionInfo()
> R version 3.0.2 (2013-09-25)
> Platform: x86_64-unknown-linux-gnu (64-bit)
>
> locale:
> [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
> [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
> [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
> [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
> [9] LC_ADDRESS=C LC_TELEPHONE=C
> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
>
> attached base packages:
> [1] parallel stats graphics grDevices utils datasets
> methods
> [8] base
>
> other attached packages:
> [1] AnnotationHub_1.2.0 IRanges_1.20.4 hom.Rn.inp.db_2.10.1
> [4] org.Rn.eg.db_2.10.1 hom.Hs.inp.db_2.10.1 org.Hs.eg.db_2.10.1
> [7] org.Dr.eg.db_2.10.1 hom.Mm.inp.db_2.10.1 org.Mm.eg.db_2.10.1
> [10] RMySQL_0.9-3 hom.Dr.inp.db_2.10.1 GO.db_2.10.1
> [13] RSQLite_0.11.4 DBI_0.2-7 AnnotationDbi_1.25.2
> [16] Biobase_2.22.0 BiocGenerics_0.8.0
>
> loaded via a namespace (and not attached):
> [1] BiocInstaller_1.12.0 compiler_3.0.2 GenomicRanges_1.14.3
> [4] rjson_0.2.13 stats4_3.0.2 tools_3.0.2
> [7] XVector_0.2.0
> >
>
> Best,
>
> Jim
>
Yes it is down. We are working to get it back up as soon as possible.
Thanks
Dan
>
> --
> James W. MacDonald, M.S.
> Biostatistician
> University of Washington
> Environmental and Occupational Health Sciences
> 4225 Roosevelt Way NE, # 100
> Seattle WA 98105-6099
>
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